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This wiki is an extension of the week-long workshop in applied phylogenetics held each Spring at the Bodega Bay Marine Lab. We're building a set of step-by-step tutorials on everything from estimating phylogenetic trees with programs like MrBayes and Garli to testing patterns of character evolution with the packages available in the R framework to investigating patterns of community evolution with Phylocom. We hope you find this Wiki useful and easy to use. If you're having trouble understanding any of the material you find here, let us know. Better still, you can make some changes of your own. If you'd like to become a contributor, there is a short guide to get you started. You don't need our permission to become a contributor or to make changes to our pages (although we will be keeping tabs on things to make sure people don't do anything stupid).

You can find tutorials sorted by subject on the Topics page. Contact us with any questions.

We are now accepting applications for the 2010 Applied Phylogenetics Workshop. If you wish to apply, please fill out the application and send it to workshop coordinator Phil Spinks <pqspinks AT ucdavis DOT edu>.

2010_Bodega_app.doc (pdf version: 2010_Bodega_app.pdf)

We've archived the 2009 course webpage here.
Sunrise over the dorms. Field Trip to Point Reyes Students working on an exercise

Sponsors

Bodega Lab

CPB University of Rochester NESCent