Differences for "2012 Workshop" - Bodega Phylogenetics Wiki

Differences:

version 26 (2012-03-10 14:57:30 by BobThomson)

version 27 (2012-03-10 15:01:23 by BobThomson)

Now Playing

Preparations to head out to the coast are underway.

Map to Storer Hall
Map to Bodega Marine Lab housing (if you see the main gate to the lab, you've gone slightly too far!)

Workshop Schedule (10-17 March 2012)

	Morning	Afternoon	Evening
Saturday		Arrivals	Student introductions
Sunday	Continuous-time Markov Models and Bayesian Inference (Huelsenbeck)	MrBayes tutorial (Brown) / Model Selection (Brown)	Setup Student Projects
Monday	Divergence-Time Estimation/Beast Tutorial (Heath)	Species-trees and *BEAST tutorial (Thomson)	Next generation sequencing technology (Eisen)
Tuesday	R Tutorial (Glor) / MCMC diagnosis (Moore)	Discrete Character Evolution lecture and BayesTraits tutorials (Glor)	Analysis of large phylogenetic datasets (Rannala)
Wednesday	Continuous character evolution and R tutorial (Mahler)	FIELD TRIPS	Work on Projects
Thursday	Rates of continuous trait evolution (Wainwright) / Morphological evolution in R (Price)	Diversification Rates (Moore)/Lineage Diversification in R	Work on Projects
Friday	Begin presentations	More student presentations	Party!!
Saturday	Pack up and go home

Instructors

	Institution	Email	Availability
			Sun	Mon	Tues	Wed	Thur	Fri
Jeremy Brown	UC Berkeley	`<jeremymbrown AT gmail DOT com>`
Jonathan Eisen	UC Davis	`<jaeisen AT ucdavis DOT edu>`
Rich Glor	University of Rochester	`<rglor AT mail DOT rochester DOT edu>`
Tracy Heath	UC Berkeley	`<tracyh AT berkeley DOT edu>`
John Huelsenbeck	UC Berkeley	`<johnh AT berkeley DOT edu>`
Luke Mahler	UC Davis	`<lmahler AT ucdavis DOT edu>`
Brian Moore	UC Davis	`<brianmoore AT ucdavis DOT edu>`
Samantha Price	UC Davis	`<saprice AT ucdavis DOT edu>`
Bruce Rannala	UC Davis	`<brannala AT ucdavis DOT edu>`
Bob Thomson	UC Davis	`<rcthomson AT ucdavis DOT edu>`
Peter Wainwright	UC Davis	`<pcwainwright AT ucdavis DOT edu>`

Wiki Editing

This is a very brief guide to common things you might want to do. You don't need to log in to edit the wiki, though we encourage you to create an account (particularly if you are adding your own tutorials).

Editing Existing Pages - Go to the page you want to edit and click on the 'edit' link at the top of the page. (for really simple edits, you can just double click the block of text you want to change)

Common editing tasks:

editing text - Just type and delete text in the editor window then hit the 'save changes' button. There are some simple formatting directions below the editor (e.g. Bold, italics, etc.)
creating links - to link to another page IN the wiki just type ["page name"] in an editor window, to link OUT of the wiki type [http://www.webpage.com] (note that quotes aren't used for linking out).
uploading files - Click the 'upload files' button at the bottom of the editor window. Choose a file and give it a name in the 'Save as' box then hit the 'upload' button. Link to the file on your page by typing [[File(filename)]] in the editor window.
displaying images - to display an image, upload it exactly the same way as with a file, then link to it by typing [[Image(filename)]] .

Adding New Pages - Create a link from an existing page to the (currently non-existent) page you want to make by typing ["New Page's Title"], click on the link and hit 'Create this page'. Your new page will open in an editor window.
Deleting Pages - Use the delete button at the bottom of the editing window.

If you want to play around to get a feel for how things work head over to the Wiki Sandbox.
More detail on editing can be found here

Deletions are marked like this.	Additions are marked like this.
Line 4:	Line 4:
[http://maps.google.com/maps?q=storer+hall&hl=en&ll=38.54115,-121.754651&spn=0.01049,0.015192&sll=38.540471,-121.753299&sspn=0.005245,0.007596&gl=us&hnear=Storer+Hall,+Davis,+California+95616&t=m&z=16 Map to Storer Hall]:	[http://maps.google.com/maps?q=storer+hall&hl=en&ll=38.54115,-121.754651&spn=0.01049,0.015192&sll=38.540471,-121.753299&sspn=0.005245,0.007596&gl=us&hnear=Storer+Hall,+Davis,+California+95616&t=m&z=16 Map to Storer Hall] [http://maps.google.com/maps?q=38.31815,-123.058392&hl=en&ll=38.317948,-123.057636&spn=0.002631,0.003798&num=1&t=h&gl=us&z=18 Map to Bodega Marine Lab housing] (if you see the main gate to the lab, you've gone slightly too far!)