Software

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Software

The software listed below is some of what will be used at the workshop. It would be helpful to download the software in this list before the workshop.

Tree inference

[WWW]MrBayes
[WWW]GARLI (command line version)

Diversification

[WWW]SymmeTREE
[WWW]BayesTraits
[WWW]Mesquite
[WWW]PDAP (this is an add on module for Mesquite)

Divergence Times

[WWW]R8s
[WWW]BEAST

Phylogeography

[WWW]Structurama (Mac users: download the unix terminal version)

General purpose

[WWW]FigTree
R (and several packages, follow the link to a tutorial on what to do)
[WWW]TextWrangler (Mac only)
[WWW]EditPad lite (PC only)
[WWW]ActivePerl (PC only, most of you will want the 'Windows (x86) MSI')

Other Software we'll use, but that you don't need to install just yet

[WWW]PAUP*
[WWW]raxml
[WWW]Brownie (we'll be using a newer version than this at the workshop)
Phylomapper

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