Recent Changes for "Topics" - Bodega Phylogenetics Wiki

Topics

2009-03-20 01:21:16

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 9:	Line 9:
- ["Rates of Species Diversification"]	+ ["Diversification Rates (Moore)" Species Diversification Rates]
Line 13:	Line 13:
- BEAST: ["Divergence Time Estimation (Moore)" Divergence Time Estimation ]	+ BEAST: ["Divergence Time Estimation (Moore)" Divergence Time Estimation]

Topics

2009-03-20 01:18:07

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 14:	Line 14:
- Divergence_Time_Estimation_%28Moore%29

Topics

2009-03-20 01:17:50

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 13:	Line 13:
- BEAST: ["Estimating Divergence Times"]	+ BEAST: ["Divergence Time Estimation (Moore)" Divergence Time Estimation ] + Divergence_Time_Estimation_%28Moore%29

Topics

2009-03-19 15:36:01

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 2:	Line 2:
- ["Estimating Phylogenetic Trees"] w/PAUP*, GARLI, MrBayes, and BEST Tutorials	+ ["Reconstructing Phylogenetic Trees"] w/PAUP*, GARLI, MrBayes, and BEST Tutorials

Topics

2009-03-19 15:35:14

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 2:	Line 2:
- ["Reconstructing Phylogenetic Trees"] w/PAUP*, GARLI, MrBayes, and BEST Tutorials	+ ["Estimating Phylogenetic Trees"] w/PAUP*, GARLI, MrBayes, and BEST Tutorials

Topics

glor — 2009-03-19 07:41:25

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 3:	Line 3:
- ["Divergence Time Estimation (Moore)"] w/BEAST Tutorial	+ ["Divergence Time Estimation (Moore)" Divergence Time Estimation] w/BEAST Tutorial

Topics

glor — 2009-03-19 07:41:02

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 3:	Line 3:
- ["Estimating Divergence Times"] w/BEAST Tutorial	+ ["Divergence Time Estimation (Moore)"] w/BEAST Tutorial

Topics

glor — 2009-03-13 13:13:34

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 7:	Line 7:
- ["Community Phylogenetics" Ecological Phylogenetics] w/Phylocom Tutorial	+ ["Community Phylogenetics" Community Phylogenetics] w/Phylocom Tutorial

Topics

glor — 2009-03-13 13:08:35

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 20:	Line 20:
- PHYLOCOM: ["Ecological Phylogenetics (Strauss & Burns)" Ecological Phylogenetics]	+ PHYLOCOM: ["Community Phylogenetics" Community Phylogenetics]

Topics

glor — 2009-03-13 12:49:54

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 7:	Line 7:
- ["Ecological Phylogenetics" Ecological Phylogenetics] w/Phylocom Tutorial	+ ["Community Phylogenetics" Ecological Phylogenetics] w/Phylocom Tutorial

Topics

glor — 2009-03-13 10:40:02

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 24:	Line 24:
- ====If you're interested in something we haven't yet posted on?====	+ ====Interested in something we haven't yet posted on?====

Topics

glor — 2009-03-13 09:52:37

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 12:	Line 12:
- ===='''Topics Sorted by Software:'''====	+ ====Topics Sorted by Software:====
Line 24:	Line 24:
- ===='''If you're interested in something we haven't yet posted on?'''====	+ ====If you're interested in something we haven't yet posted on?====
Line 27:	Line 27:
- ===='''General advice on succeeding in applied phylogenetics:'''====	+ ====General advice on succeeding in applied phylogenetics:====

Topics

glor — 2009-03-13 09:52:09

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 2:	Line 2:
- ["Reconstructing Phylogenetic Trees"] w/PAUP*, GARLI, and MrBayes Tutorials	+ ["Reconstructing Phylogenetic Trees"] w/PAUP*, GARLI, MrBayes, and BEST Tutorials

Topics

glor — 2009-03-13 09:51:37

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 1:	Line 1:
- ===='''Topics Sorted by Type of Analysis:'''==== - ["Reconstructing Phylogenetic Trees"] - ["Delimiting Populations & Species"] - ["Biogeography (Donoghue & Smith)" Biogeography] - ["Estimating Divergence Times"]	+ ===Topics Sorted by Type of Analysis:=== + ["Reconstructing Phylogenetic Trees"] w/PAUP*, GARLI, and MrBayes Tutorials + ["Estimating Divergence Times"] w/BEAST Tutorial + ["Delimiting Populations & Species"] w/Structure and Structurama Tutorials + ["Phylogenetic Comparative Methods"] w/Mesquite, R, and BayesTraits Tutorials + ["Morphological Diversification and Rates of Evolution"] w/Brownie Tutorial + ["Ecological Phylogenetics" Ecological Phylogenetics] w/Phylocom Tutorial + ["Biogeography (Donoghue & Smith)" Biogeography] w/Lagrange Tutorial
Line 7:	Line 10:
- ["Phylogenetic Comparative Methods"] - ["Morphological Diversification and Rates of Evolution"] - ["Ecological Phylogenetics (Strauss & Burns)" Ecological Phylogenetics]
Line 11:	Line 11:
-

Topics

GregPauly — 2009-03-12 10:32:05

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 21:	Line 21:
- PHYLCOM: ["Ecological Phylogenetics (Strauss & Burns)" Ecological Phylogenetics]	+ PHYLOCOM: ["Ecological Phylogenetics (Strauss & Burns)" Ecological Phylogenetics]

Topics

BobThomson — 2009-03-12 10:13:30

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 10:	Line 10:
- ["Phylogenomics (Eisen) 2009" Phylogenomcs]	+ ["Phylogenomics (Eisen) 2009" Phylogenomics]

Topics

glor — 2009-03-11 09:06:03

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 10:	Line 10:
	+ ["Phylogenomics (Eisen) 2009" Phylogenomcs]

Topics

glor — 2009-03-10 15:05:53

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 24:	Line 24:
	+ ===='''If you're interested in something we haven't yet posted on?'''==== + Post it on the ["Wanted"] page. +
Line 26:	Line 29:
- - ===='''If you're interested in something we haven't yet posted on?'''==== - Post it on the ["Wanted"] page.

Topics

glor — 2009-03-10 15:05:31

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 1:	Line 1:
- - ====Topics Sorted by Type of Analysis:====	+ ===='''Topics Sorted by Type of Analysis:'''====
Line 13:	Line 12:
- ====Topics Sorted by Software:====	+ ===='''Topics Sorted by Software:'''====
Line 25:	Line 24:
- ====General advice on succeeding in applied phylogenetics:====	+ ===='''General advice on succeeding in applied phylogenetics:'''====
Line 28:	Line 27:
- ====If you're interested in something we haven't yet posted on?====	+ ===='''If you're interested in something we haven't yet posted on?'''====

Topics

glor — 2009-03-10 15:04:43

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 2:	Line 2:
- - ===Topics Sorted by Type of Analysis:===	+ ====Topics Sorted by Type of Analysis:====
Line 13:	Line 12:
- ===Topics Sorted by Software:===	+ + ====Topics Sorted by Software:====
Line 25:	Line 25:
- General advice on succeeding in applied phylogenetics:	+ ====General advice on succeeding in applied phylogenetics:====
Line 28:	Line 28:
- If you're interested in something we haven't yet posted on?	+ ====If you're interested in something we haven't yet posted on?====

Topics

glor — 2009-03-10 15:04:02

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 1:	Line 1:
- If you're interested in some general advice on succeeding in applied phylogenetics: - ["Advice for Aspiring Phylogeneticists"]
Line 4:	Line 2:
- If you're interested in learning about a particular type of analysis:	+ + ===Topics Sorted by Type of Analysis:===
Line 14:	Line 13:
- If you're interested in using a specific software application.	+ ===Topics Sorted by Software:===
Line 26:	Line 25:
	+ General advice on succeeding in applied phylogenetics: + ["Advice for Aspiring Phylogeneticists"] +

Topics

glor — 2009-03-10 15:02:50

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 21:	Line 21:
- PAUP: ["Parsimony_(PAUP)"]	+ PAUP: ["Parsimony (PAUP)"]

Topics

glor — 2009-03-10 15:02:40

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 21:	Line 21:
	+ PAUP: ["Parsimony_(PAUP)"]

Topics

glor — 2009-03-10 15:02:02

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 21:	Line 21:
	+ PHYLCOM: ["Ecological Phylogenetics (Strauss & Burns)" Ecological Phylogenetics]

Topics

glor — 2009-03-10 15:00:26

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 12:	Line 12:
	+ ["Ecological Phylogenetics (Strauss & Burns)" Ecological Phylogenetics]

Topics

glor — 2009-03-09 20:01:19

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 18:	Line 18:
- Garli (0.95 GUI version): ["Reconstructing Phylogenetic Trees"] - Garli (0.96 command line version): ["Reconstructing Phylogenetic Trees"]	+ Garli (0.95 GUI version & 0.96 command line version): ["Reconstructing Phylogenetic Trees"]

Topics

glor — 2009-03-09 20:00:54

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 17:	Line 17:
	+ Lagrange: ["Biogeography (Donoghue & Smith)" Biogeography]
Line 21:	Line 22:
	+ Structure & Structurama: ["Delimiting Populations & Species"]

Topics

BobThomson — 2009-03-09 20:00:01

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 17:	Line 17:
	+ Garli (0.95 GUI version): ["Reconstructing Phylogenetic Trees"] + Garli (0.96 command line version): ["Reconstructing Phylogenetic Trees"]

Topics

glor — 2009-03-09 19:59:33

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 7:	Line 7:
- ["Biogeography_(Donoghue_%26_Smith)" Biogeography"]	+ ["Biogeography (Donoghue & Smith)" Biogeography]

Topics

glor — 2009-03-09 19:59:17

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 7:	Line 7:
	+ ["Biogeography_(Donoghue_%26_Smith)" Biogeography"]

Topics

glor — 2009-03-08 13:21:08

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 2:	Line 2:
-	+ ["Advice for Aspiring Phylogeneticists"]

Topics

glor — 2009-03-08 13:20:41

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 1:	Line 1:
	+ If you're interested in some general advice on succeeding in applied phylogenetics: + +

Topics

glor — 2009-03-08 09:11:12

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 15:	Line 15:
	+ + If you're interested in something we haven't yet posted on? + Post it on the ["Wanted"] page.

Topics

glor — 2009-03-08 09:08:37

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 5:	Line 5:
	+ ["Rates of Species Diversification"]
Line 6:	Line 7:
- ["Rates of Species Diversification"]

Topics

2009-03-08 07:57:36

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 1:	Line 1:
- Topics	+ If you're interested in learning about a particular type of analysis:
Line 9:	Line 9:
- Software Applications	+ If you're interested in using a specific software application.

Topics

2009-03-08 07:55:36

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 10:	Line 10:
	+ BEAST: ["Estimating Divergence Times"]
Line 12:	Line 13:
	+ Mesquite: ["Phylogenetic Comparative Methods"]

Topics

2009-03-08 07:54:28

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 10:	Line 10:
	+ BEST: ["Reconstructing Phylogenetic Trees"] + Brownie: ["Morphological Diversification and Rates of Evolution"]
Line 11:	Line 13:
- Brownie: ["Morphological Diversification and Rates of Evolution"]

Topics

2009-03-08 07:51:39

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 9:	Line 9:
- - Methods	+ Software Applications + R: ["Phylogenetic Comparative Methods"] + Brownie: ["Morphological Diversification and Rates of Evolution"]

Topics

2009-03-08 07:47:21

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 7:	Line 7:
- ["Phylogenetics and Comparative Method in R"]

Topics

2009-03-08 07:45:09

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 1:	Line 1:
- \|\|I.\|\|["Reconstructing Phylogenetic Trees"]\|\| - \|\|II.\|\|["Delimiting Populations & Species"]\|\| - \|\|III.\|\|["Estimating Divergence Times"]\|\| - \|\|IV.\|\|["Phylogenetic Comparative Methods"]\|\| - \|\|V.\|\|["Rates of Species Diversification"]\|\| - \|\|VI.\|\|["Phylogenetics and Comparative Method in R"]\|\| - \|\|VII.\|\|["Morphological Diversification and Rates of Evolution"]\|\|	+ Topics + ["Reconstructing Phylogenetic Trees"] + ["Delimiting Populations & Species"] + ["Estimating Divergence Times"] + ["Phylogenetic Comparative Methods"] + ["Rates of Species Diversification"] + ["Phylogenetics and Comparative Method in R"] + ["Morphological Diversification and Rates of Evolution"] + + + Methods

Topics

SPrice — 2009-03-02 11:41:30

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 7:	Line 7:
	+ \|\|VII.\|\|["Morphological Diversification and Rates of Evolution"]\|\|

Topics

2009-03-01 13:04:00

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 6:	Line 6:
	+ \|\|VI.\|\|["Phylogenetics and Comparative Method in R"]\|\|

Topics

glor — 2008-03-19 11:46:09

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 3:	Line 3:
- \|\|III.\|\|["Time Calibrated Molecular Phylogenies"]\|\|	+ \|\|III.\|\|["Estimating Divergence Times"]\|\|

Topics

glor — 2008-03-19 11:23:48

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 1:	Line 1:
- \|\|<tableborder="1" tablewidth="70%" rowbgcolor="#FFFFE0" align="center">\|\|''''''\|\|''''''\|\| - \|\|I.\|\|["Reconstructing Phylogenetic Trees"] - \|\|II.\|\|["Delimiting Populations & Species"] - \|\|III.\|\|["Time Calibrated Molecular Phylogenies"] - \|\|IV.\|\|["Phylogenetic Comparative Methods"] - \|\|V.\|\|["Rates of Species Diversification"]	+ \|\|I.\|\|["Reconstructing Phylogenetic Trees"]\|\| + \|\|II.\|\|["Delimiting Populations & Species"]\|\| + \|\|III.\|\|["Time Calibrated Molecular Phylogenies"]\|\| + \|\|IV.\|\|["Phylogenetic Comparative Methods"]\|\| + \|\|V.\|\|["Rates of Species Diversification"]\|\|

Topics

glor — 2008-03-19 11:22:53

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 1:	Line 1:
- I. ["Reconstructing Phylogenetic Trees"] - II. ["Delimiting Populations & Species"] - III. ["Time Calibrated Molecular Phylogenies"] - IV. ["Phylogenetic Comparative Methods"] - V. ["Rates of Species Diversification"]	+ \|\|<tableborder="1" tablewidth="70%" rowbgcolor="#FFFFE0" align="center">\|\|''''''\|\|''''''\|\| + \|\|I.\|\|["Reconstructing Phylogenetic Trees"] + \|\|II.\|\|["Delimiting Populations & Species"] + \|\|III.\|\|["Time Calibrated Molecular Phylogenies"] + \|\|IV.\|\|["Phylogenetic Comparative Methods"] + \|\|V.\|\|["Rates of Species Diversification"]

Topics

glor — 2008-03-19 11:20:48

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 1:	Line 1:
- ["Reconstructing Phylogenetic Trees"] - ["Delimiting Populations & Species"] - ["Time Calibrated Molecular Phylogenies"] - ["Phylogenetic Comparative Methods"] - ["Rates of Species Diversification"]	+ I. ["Reconstructing Phylogenetic Trees"] + II. ["Delimiting Populations & Species"] + III. ["Time Calibrated Molecular Phylogenies"] + IV. ["Phylogenetic Comparative Methods"] + V. ["Rates of Species Diversification"]

Topics

glor — 2008-03-19 11:20:20

Differences for Topics

Deletions are marked with - .	Additions are marked with +.
Line 1:	Line 1:
	+ ["Reconstructing Phylogenetic Trees"] + ["Delimiting Populations & Species"] + ["Time Calibrated Molecular Phylogenies"] + ["Phylogenetic Comparative Methods"] + ["Rates of Species Diversification"]